Publications

2025

Hist2Cell: Deciphering Fine-grained Cellular Architectures from Histology Images

Weiqin Zhao, Zhuo Liang, Xianjie Huang, Yuanhua Huang, Lequan Yu.
Cell Genomics, 2025.
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2025

Feature Preserving Shrinkage on Bayesian Neural Networks via the R2D2 Prior

Tsai Hor Chan, Dora Yan Zhang, Guosheng Yin, Lequan Yu.
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2025.
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2025

Scaling Chest X-ray Foundation Models from Mixed Supervisions for Dense Prediction

Fuying Wang, Lequan Yu.
IEEE Transactions on Medical Imaging (TMI), 2025.
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2025

HyperPath: Knowledge-Guided Hyperbolic Semantic Hierarchy Modeling for WSI Analysis

Peixiang Huang, Yanyan Huang, Weiqin Zhao, Junjun He, Lequan Yu.
Medical Image Computing and Computer Assisted Intervention (MICCAI), 2025.
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2025

Democratizing Large Language Model-Based Graph Data Augmentation via Latent Knowledge Graphs

Yushi Feng, Tsai Hor Chan, Guosheng Yin, Lequan Yu.
Neural Networks, 2025.
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2025

CTPD: Cross-Modal Temporal Pattern Discovery for Enhanced Multimodal Electronic Health Records Analysis

Fuying Wang, Feng Wu, Yihan Tang, Lequan Yu.
Annual Meeting of the Association for Computational Linguistics (ACL), 2025.
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2025

From Token to Rhythm: A Multi-Scale Approach for ECG-Language Pretraining

Fuying Wang, Jiacheng Xu, Lequan Yu.
International Conference on Machine Learning (ICML), 2025.
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2025

Cross-Modal Alignment via Variational Copula Modelling

Feng Wu, Tsai Hor Chan, Fuying Wang, Guosheng Yin, Lequan Yu.
International Conference on Machine Learning (ICML), 2025.
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2025

TAD-Graph: Enhancing Whole Slide Image Analysis via Task-Aware Subgraph Disentanglement

Fuying Wang, Jiayi Xin, Weiqin Zhao, Yuming Jiang, Maximus Yeung, Liansheng Wang, Lequan Yu .
IEEE Transactions on Medical Imaging (TMI), 2025.
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2025

Large Images are Gaussians: High-Quality Large Image Representation with Levels of 2D Gaussian Splatting

Lingting Zhu, Guying Lin, Jinnan Chen, Xinjie Zhang, Zhenchao Jin, Zhao Wang, Lequan Yu .
AAAI Conference on Artificial Intelligence (AAAI), 2025.
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2025

From Layers to States: A State Space Model Perspective to Deep Neural Network Layer Dynamics

Qinshuo Liu, Weiqin Zhao , Wei Huang, Yanwen Fang, Lequan Yu, Guodong Li.
International Conference on Learning Representations (ICLR), 2025.
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2024

Aligning Knowledge Concepts to Whole Slide Images for Precise Histopathology Image Analysis

Weiqin Zhao, Ziyu Guo, Yinshuang Fan, Yuming Jiang, Maximus Yeung, Lequan Yu .
npj Digital Medicine, 2024.
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2024

Free Lunch in Pathology Foundation Model: Task-specific Model Adaptation with Concept-Guided Feature Enhancement

Yanyan Huang, Weiqin Zhao,Yihang Chen, Yu Fu, Lequan Yu .
Conference on Neural Information Processing Systems (NeurIPS), 2024.
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2024

Unleash the Power of State Space Model for Whole Slide Image with Local Aware Scanning and Importance Resampling

Yanyan Huang, Weiqin Zhao, Yu Fu, Lingting Zhu, Lequan Yu .
IEEE Transactions on Medical Imaging (TMI), 2024.
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2024

Multi-sensor Learning Enables Information Transfer across Different Sensory Data and Augments Multi-modality Imaging

Lingting Zhu, Yizheng Chen, Lianli Liu, Lei Xing, Lequan Yu .
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2024.
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2024

HERGen: Elevating Radiology Report Generation with Longitudinal Data

Fuying Wang , Shenghui Du, Lequan Yu .
European Conference on Computer Vision (ECCV), 2024.
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2024

cDP-MIL: Robust Multiple Instance Learning via Cascaded Dirichlet Process

Yihang Chen , Tsai Hor Chan , Guosheng Yin, Yuming Jiang, Lequan Yu
European Conference on Computer Vision (ECCV), 2024.
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2024

Multi-task Heterogeneous Graph Learning on Electronic Health Records

Tsai Hor Chan , Guosheng Yin, Kyongtae Bae, Lequan Yu
Neural Networks, 2024.
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2023

Adaptive Uncertainty Estimation via High-Dimensional Testing on Latent Representations

Tsai Hor Chan , Kin Wai Lau, Jiajun Shen, Guosheng Yin, Lequan Yu .
Conference on Neural Information Processing Systems (NeurIPS), 2023.
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2023

IDRNet: Intervention-Driven Relation Network for Semantic Segmentation

Zhenchao Jin, Xiaowei Hu, Lingting Zhu, Luchuan Song, Li Yuan, Lequan Yu.
Conference on Neural Information Processing Systems (NeurIPS), 2023.
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2023

ConSlide: Asynchronous Hierarchical Interaction Transformer with Breakup-Reorganize Rehearsal for Continual Whole Slide Image Analysis

Yanyan Huang, Weiqin Zhao, Shujun Wang, Yu Fu, Yuming Jiang, Lequan Yu.
International Conference on Computer Vision (ICCV), 2023.
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2023

HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis

Ziyu Guo, Weiqin Zhao, Shujun Wang, Lequan Yu.
Medical Image Computing and Computer Assisted Intervention (MICCAI), 2023.
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2023

Make-A-Volume: Leveraging Latent Diffusion Models for Cross-Modality 3D Brain MRI Synthesis

Lingting Zhu, Zeyue Xue, Zhenchao Jin, Xian Liu, Jingzhen He, Ziwei Liu, Lequan Yu.
Medical Image Computing and Computer Assisted Intervention (MICCAI), 2023.
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2023

Transformer-based Multimodal Fusion for Survival Prediction by Integrating Whole Slide Images, Clinical, and Genomic Data

Yihang Chen, Weiqin Zhao, Lequan Yu.
IEEE International Symposium on Biomedical Imaging (ISBI), 2023.
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2023

Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning

Tsai Hor Chan, Fernando Julio Cendra, Lan Ma, Guosheng Yin, Lequan Yu.
IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023.
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2023

Taming Diffusion Models for Audio-Driven Co-Speech Gesture Generation

Lingting Zhu, Xian Liu, Xuanyu Liu, Rui Qian, Ziwei Liu, Lequan Yu.
IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2023.
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2023

MulGT: Multi-task Graph-Transformer with Task-aware Knowledge Injection and Domain Knowledge-driven Pooling for Whole Slide Image Analysis

Weiqin Zhao, Shujun Wang, Maximus Yeung, Tianye Niu, Lequan Yu.
AAAI Conference on Artificial Intelligence (AAAI), 2023.
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2022

Multi-Granularity Cross-modal Alignment for Generalized Medical Visual Representation Learning

Fuying Wang, Yuyin Zhou, Shujun Wang, Varut Vardhanabhuti, Lequan Yu.
Conference on Neural Information Processing Systems (NeurIPS), 2022.
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2022

MCIBI++: Soft Mining Contextual Information Beyond Image for Semantic Segmentation

Zhenchao Jin, Dongdong Yu, Zehuan Yuan, Lequan Yu.
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 2022.
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2022

You Should Look at All Objects

Zhenchao Jin, Dongdong Yu, Luchuan Song, Zehuan Yuan, Lequan Yu.
European Conference on Computer Vision (ECCV), 2022.
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